From “Fatbands” to Wannier Functions of Silver

Electronic bands – the energy solutions εi(k) of the Kohn-Sham equation of a non-interacting electron in an effective potential, are, despite of approximations made in practical DFT calculations, very successful in describing the physics of condensed matter. It is sometimes necessary (or simply practical) to describe the band-structure (“Spaghetti”) in terms of local orbitals, that is in a language that is more close to the “chemist’s picture” of atomic s,p,d orbitals. Generally, the s,p,d nomenclature is linked to the angular momentum l of a radially symmetrical potential (“Hydrogen model”) – and not a periodic crystal potential. It can be shown, however, that the resulting electronic bands can often be assigned to a certain l, at least for the low-energy core bands.

Most programs available allow to obtain this information either as a function of energy alone (the  density of states, DOS and projected density of states, PDOS) or resolved in energy and crystal momentum which is often called a “fat-band” representation as the weight of the orbital s,p,d characteristic is shown as the line thickness for practical reasons.  As a simple example I have calculate the PDOS of bulk silver using the ELK code, a full-potential (all-electrons) linearised augmented-plane wave (FP-LAPW) DFT code. The relevant task numbers in this case are 0 (the ground-state), 10 (the total and projected density of states) and 21 which the manual lists conveniently to give us the Band structure plot which includes angular momentum characters for every atom. Details can be found in the attached elk.in file.

fatbands_ELK_Ag

The figure shows the band structure on the left-hand side and the corresponding integrated information with the same color-code on the right-hand side. I included arrows to highlight how certain features in the PDOS can be interpreted based on the band structure and vice versa. The first thing to notice is that most bands above the Fermi level (set as 0 in the ELK code) are a mix of various l-states whereas just below the Fermi level the d-states form a fairly flat (localized) set of bands.

Now I usually work with the plane-wave pseudopotential method as implemented in Quantum-Espresso (QE 6.3) and not with full-potentials but I chose above calculation as an entry point to show what can be a problem with pseudopotentials – bear with me. Turning to QE I generate the same input structure as previously used in ELK using cif2cell with the program switch -p pwscf. I use my favorite set of norm-conserving pseudopotentials from the ONCV library and generate the wave-functions using the latest version (3.3.1) of the ONCV code. For silver I find that a regular k-point grid of 11x11x11 and a cutoff of the wave-functions of about 80 Ry gives converged results. The calculation of fatbands is a bit more difficult in QE than ELK and involves the following steps:

  1. calculation of the band-structure using pw.x and bands.x
  2. calculation of the “projection on wave-functions” using projwfc.x
  3. generation of the weights by calculating the overlap between projections and wave functions using plotband.x

All steps are automated in the bands.sh script attached but I want to highlight that the setting of  lsym=.true./.false. in the input for bands.x and projwfc.x is important. When the projection file is found by plotband.x it asks for a list of wave functions to calculate the overlaps. The proper numbers can be found in the output of projwfc.x and looks something like

state # 1: atom 1 (Ag ), wfc 1 (l=0 m= 1)
state # 2: atom 1 (Ag ), wfc 2 (l=1 m= 1)
state # 3: atom 1 (Ag ), wfc 2 (l=1 m= 2)
state # 4: atom 1 (Ag ), wfc 2 (l=1 m= 3)
state # 5: atom 1 (Ag ), wfc 3 (l=0 m= 1)
state # 6: atom 1 (Ag ), wfc 4 (l=2 m= 1)
state # 7: atom 1 (Ag ), wfc 4 (l=2 m= 2)
state # 8: atom 1 (Ag ), wfc 4 (l=2 m= 3)
state # 9: atom 1 (Ag ), wfc 4 (l=2 m= 4)
state # 10: atom 1 (Ag ), wfc 4 (l=2 m= 5)

The ordering here is the same as in the pseudopotential file, so in case there is any doubt consult the header of the pseudo and confirm the valence configuration:

#n l occ
4 0 2.00
4 1 6.00
4 2 10.00
5 0 1.00

The following figure shows the fatbands as obtained by QE and the band structure obtained from maximally localized wannier functions (MLWF) via wannier90.

bands-wannier_ONCV_QE

If you are familiar with wannier90 you know that the definition of an initial “guess” of wavefunctions is usually critical in order to obtained well localized wannier functions. Looking at the fatbands of QE the character of the bands just above the Fermi level remains, unfortunately a mystery. Overall the band-structure agrees very well with the results obtained from ELK which tells us that the pseudo has no problem but the wave functions generated with ONCV are less than perfect. If I had read the release notes carefully I would have been able to expect this:

The upf output now includes pseudo wave funtions for the occupied states.
This will allow LDA+U calculations in some codes. Please note that
ONCVPSP potentials have not been tested or benchmarked for this use.
Also be aware that LDA+U is a semi-empirical mean field theory, and
does NOT represent many-body physics.

Ultimately I had no problem defining proper projections (with the guidance of the ELK fatbands) but above should be kept in mind when performing, for example, LDA+U calculations in QE (note that this does not really pose a problem here as the highest-l manifold, the d-bands, have proper wave-functions!).

For wannier90 initial projections of

begin projections
Ag: s;p;d
end projections

result in an average spread of Ω~1.1 per atom which is fairly well localized and the resulting tight-binding bands agree well with the DFT bands, as can be seen on the right-hand side above.

Hope this was helpful – if there is any problem running attached scripts please leave it in the comments!

 

PS: as correctly mentioned in the comments, a “better” pseudopotential would be able to produce a more accurate fat-band representation. Therefore I attached a small comparison of 3 easily available PPs (from the PSLibrary, the GBRV library and ONCV library) – an updated “run script” is attached as well. HTH!

comparison_Ag_pseudos

fatbands_Ag

Ag_bands_comparison.sh

 

3 thoughts on “From “Fatbands” to Wannier Functions of Silver

  1. My 2cents of comments are not coming from an expert, but I will try to say something that might be useful. From your .zip file, which is not included the actual pseudopotential you generated namely: Ag_ONCV_PBE-Chris.UPF, this is important to see how it works in projected band plot with pwscf. The p orbital characters are missing in the fatband plot may be coming from the generated pseudopotential, result can be improved if we use QE’s pseudopotential, for examples: https://www.quantum-espresso.org/upf_files/Ag.pbe-dn-rrkjus_psl.0.1.UPF
    And it’s even more helpful if the provided zip file contains also the “plot.gnuscf” as stated in the bash file.

    Cheers 🙂
    Delong.

    Liked by 1 person

    1. Hi Delong, thank you for your comment and you are absolutely right. I found that the PSLibrary (1.0.0 is the most recent version I believe) has much better wavefunctions than the ONCV and the GBRV pseudos are also giving much improved “fatbands”.

      The reason I am usually sticking with the ONCV is that, in my experience, they give good structural (lattice constants, phonons) results and post-DFT codes such as YAMBO require norm-conserving pseudos if I remember correctly. So there is a certain “pitfall” when blindly trusting a single set of pseudos to satisfy “all needs” 🙂

      Thanks for your comment, I should probably give a comparison of fatbands somewhere!

      Like

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